Installation

Prerequisites

Python Dependencies

phippery — Core PhIP-Seq data structures and normalization (docs)
pandas, numpy, scipy — Data manipulation and statistics
plotly — Interactive heatmap visualizations
streamlit — Interactive 3D dashboard application

Setup

Install Nextflow:
```
curl -s https://get.nextflow.io | bash
```

Clone the repository:

git clone https://github.com/oucru-id/phip-seq-ont.git
cd phip-seq-ont

Verify installation:
```
nextflow -v
```